From: Improved branch and bound algorithm for detecting SNP-SNP interactions in breast cancer
SNP (Genes) | Chr. | SNP Genotype | Control no. /Case no. | Scoring function | p-value | ||||
---|---|---|---|---|---|---|---|---|---|
CC | SN | SP | Average | Odds Ratio | |||||
1. rs12812942 | 12 | 1-AA | 174/128 | Â | Â | Â | Â | Â | Â |
(CD4) | Â | 2-AT | 141/76 | 0.482 | 0.372 | 0.552 | 0.469 | 0.733 (0.503-1.068) | 0.10 |
 |  | 3-TT | 19/16 | 0.564 | 0.111 | 0.902 | 0.526 | 1.145 (0.536-2.438) | 0.72 |
2. rs3136685 | 17 | 1-GG | 107/77 | Â | Â | Â | Â | Â | Â |
(CCR7) | Â | 2-AG | 180/114 | 0.462 | 0.587 | 0.373 | 0.474 | 0.880 (0.594-1.304) | 0.57 |
 |  | 3-AA | 47/29 | 0.523 | 0.274 | 0.695 | 0.357 | 0.857 (0.478-1.536) | 0.68 |
3. rs2228014 | 2 | 1-CC | 254/151 | Â | Â | Â | Â | Â | Â |
(CXCR4) | Â | 2-CT | 73/63 | 0.586 | 0.294 | 0.777 | 0.552 | 1.452 (0.962-2.191) | 0.07 |
 |  | 3-TT | 7/6 | 0.622 | 0.382 | 0.973 | 0.659 | 1.442 (0.421-4.880) | 0.57 |
4. rs1801157 | 10 | 1-GG | 175/106 | Â | Â | Â | Â | Â | Â |
(CXCL12) | Â | 2-AG | 136/98 | 0.530 | 0.480 | 0.562 | 0.524 | 1.189 (0.822-1.723) | 0.37 |
 |  | 3-AA | 23/16 | 0.597 | 0.131 | 0.884 | 0.537 | 1.149 (0.550-2.387) | 0.73 |
5. rs3025039 | 6 | 1-CC | 211/155 | Â | Â | Â | Â | Â | Â |
(VEGF) | Â | 2-CT | 117/59 | 0.498 | 0.276 | 0.643 | 0.472 | 0.687 (0.463-1.016) | 0.05 |
 |  | 3-TT | 6/6 | 0.574 | 0.037 | 0.972 | 0.528 | 1.361 (0.381-4.870) | 0.77 |
6. rs2287074 | 16 | 1-GG | 164/113 | Â | Â | Â | Â | Â | Â |
(MMP2) | Â | 2-AG | 139/93 | 0.505 | 0.451 | 0.541 | 0.499 | 0.971 (0.670-1.408) | 0.93 |
 |  | 3-AA | 31/14 | 0.553 | 0.110 | 0.841 | 0.510 | 0.655 (0.316-1.347) | 0.25 |
7. rs10506957 | 12 | 1-TT | 182/133 | Â | Â | Â | Â | Â | Â |
(KITLG) | Â | 2-CT | 133/69 | 0.486 | 0.342 | 0.578 | 0.469 | 0.709 (0.484-1.042) | 0.08 |
 |  | 3-CC | 19/18 | 0.568 | 0.119 | 0.905 | 0.531 | 1.296 (0.622-2.700) | 0.08 |