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Table 2 Top Scorer Clusters

From: Dynamic gene network reconstruction from gene expression data in mice after influenza A (H1N1) infection

     

Time Point (day p.i.)

Topological Metric

1(day p.i.)

2(day p.i.)

3(day p.i.)

4(day p.i.)

5(day p.i.)

Rank

1

2

3

4

5

1

2

3

4

5

1

2

3

4

5

1

2

3

4

5

1

2

3

4

5

Hubba MNC

17

18

24

15

0

17

18

15

24

25

17

25

15

18

24

17

25

15

24

18

25

24

15

17

18

Hubba EPC

17

18

24

15

20

17

24

15

18

25

17

25

15

24

18

17

25

15

24

18

25

15

24

18

17

Hubba DMNC

0

10

4

6

7

11

14

20

32

0

2

11

12

22

31

31

0

4

10

7

0

11

22

28

31

Hubba Degree

17

18

24

15

0

17

18

15

24

25

17

15

25

18

24

17

25

15

18

24

25

24

15

18

17

Hubba BN

17

18

15

-

-

17

15

-

-

-

18

17

15

24

-

17

18

15

24

-

18

24

15

17

20

Indegree

10

11

7

9

22

11

14

9

32

17

10

11

32

8

9

10

11

24

23

32

10

11

14

23

9

Outdegree

17

18

24

15

3

17

18

15

24

25

17

15

25

18

24

17

25

15

24

18

25

15

24

18

17

Betweenness Centrality

17

18

15

24

33

17

18

15

20

25

17

18

29

15

25

17

25

18

23

15

18

17

25

15

23

  1. Clusters were evaluated in every time point with several topological metrics as defined in Hubba analyzer. Also, the indegree, outdegree and betweenness centrality scores were calculated with the use of Cytoscape plugins. We display the top 5 clusters (with descending rank order) at every time point with the highest scores in every metric, with the exception of BN metric where only few clusters had score > 0.