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Table 4 Timeline of PPI/Protein-DNA interactions

From: Dynamic gene network reconstruction from gene expression data in mice after influenza A (H1N1) infection

A

B

C

D

E

PPI/Protein-DNA interaction

   

Relb

Cxcl13

Nfkb2

Cxcl13

Nfkbiz

Il6

  

Bcl3

Cyld

Stat1

Gm9706

  

Prkcz

Junb

Cxcl10

Cxcr3

Stat1

Cxcl10

Stat2

Cxcl10

Irf9

Cxcl10

   

Plcg2

Spnb2

  

Tlr2

Tlr6

    

Ncor1

Cxcl10

 

Stat4

Ifng

 

Tbx21

Ifng

 

Bid

Gzmb

Irf1

Gbp2

  

 

Irf1

Il27

 

Gpnmb

Pla2g4a

   

Sfpi1

Il1b

   

Tbp

Ifng

Ccl7

Ccr2

   

Sfpi1

Cxcl9

    

Cxcl9

Cxcr3

 

Stat1

Cxcl9

Lcp2

Vav1

Ptpn6

Vav1

 

Ccl4

Ccr5

   

Ncor1

Ccl4

  

 

Irf1

Il15

Gzmb

Serpinb9

 

Dok2

Tek

  

Rad21

Ifng

   

Ccl2

Ccrl2

Etv6

Lcn2

 

Ripk

Zbp1

Irf7

Myd88

Irf7

Ifnb1

Stat1

Irf7

 

Gadd45g

Loc100046823

 

Irf8

Cxcl9

 

Irf8

Gm9706

Ccl2

Ccr2

   

Junb

Il6

 

Atf3

Il6

   

Runx3

Ifng

   

Ncor1

Ccl2

    

Gzmb

Hopx

 

Irf7

Ifna4

 

Ncor1

Cxcl9

 

Il1rl1

Myd88

  1. Each line in the table corresponds to one PPI or protein-DNA interaction. The bullets indicate the exact day (A: day 1 p.i., B: day 2 p.i., C: day 3 p.i., D: day 4 p.i., E: day 5 p.i.) that the corresponding interaction is present in the resulting network.