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Table 3 Comparison of the discordant calls between McSNP and sequencing.

From: A base-calling algorithm for Tm-shifted melting curve SNP assay

  McSNP Sequencing X P(allele 1) P(allele 2) P(allele 3)
SNP5 allele 3 (CC) allele 2 (CG) 0.73 0 0.19 0.81
SNP6 allele 3 (AA) allele 2 (AG) 0.71 0 0.40 0.60
SNP6 allele 3 (AA) allele 2 (AG) 0.72 0 0.28 0.72
SNP6 allele 3 (AA) allele 2 (AG) 0.71 0 0.40 0.60
SNP6 No call allele 2 (AG) 0.70 0 0.52 0.48
SNP6 allele 3 (AA) allele 2 (AG) 0.71 0 0.40 0.60
SNP7 No call allele 2 (GT) 0.70 0 0.52 0.48
  1. Base calls, allele signals (X) and their corresponding allele probabilities are presented.
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Journal of Clinical Bioinformatics

ISSN: 2043-9113