Table 1 Shows the total number of junctions predicted by SPEventH and Topaht for the top ten most highly expressed genes in T11
From: Genome-wide Profiling of RNA splicing in prostate tumor from RNA-seq data using virtual microarrays
Genes | Number of exons | SPEventH predicted/represented | Tophat | Gene expression |
|---|---|---|---|---|
KLK3 | 5 | 21/38 | 0 | 210099 |
KLK2 | 5 | 23/36 | 0 | 135249 |
MYH11 | 42 | 24/115 | 21 | 56872 |
EEF2 | 15 | 43/104 | 0 | 38561 |
MSMB | 4 | 21/39 | 5 | 25208 |
LTF | 17 | 15/71 | 1 | 36365 |
FLNA | 48 | 71/151 | 0 | 27648 |
SRRM2 | 15 | 34/60 | 0 | 23211 |
ACPP | 11 | 15/34 | 2 | 21250 |
NDRG1 | 16 | 43/131 | 0 | 20155 |
MLPH | 15 | 28/72 | 1 | 19556 |
ACTG2 | 8 | 17/35 | 5 | 18356 |