Table 3 Shows the number of exon-exon junctions on which reads were uniquely mapped from each sample listed in column 1 by the two methods SPEventH (Column 2) and Tophat (column 3)
From: Genome-wide Profiling of RNA splicing in prostate tumor from RNA-seq data using virtual microarrays
Sample | SPEventH | Tophat | Common |
|---|---|---|---|
T02 | 117076 | 120864 | 43891 |
T03 | 97898 | 101032 | 36109 |
T06 | 118972 | 145448 | 41827 |
T08 | 99557 | 101261 | 38229 |
T09 | 86033 | 103793 | 31510 |
T11 | 134996 | 135378 | 26818 |
T13 | 167250 | 166213 | 26758 |
T15 | 164348 | 192518 | 28383 |
T19 | 168447 | 198934 | 27790 |
T23 | 164983 | 188546 | 30043 |
N02 | 102874 | 92880 | 39396 |
N03 | 97750 | 92234 | 36411 |
N06 | 89427 | 99376 | 31770 |
N08 | 75131 | 65474 | 26844 |
N09 | 78205 | 68111 | 29759 |
N11 | 153994 | 155169 | 24175 |
N13 | 155390 | 175640 | 26132 |
N15 | 148237 | 167555 | 26825 |
N19 | 151464 | 149138 | 36617 |
N23 | 154390 | 157457 | 30576 |