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Table 4 Splice events up-and down-regulated in a tumor specific fashion with a p-value of < 0.0001

From: Genome-wide Profiling of RNA splicing in prostate tumor from RNA-seq data using virtual microarrays

Sl.No Gene name Source of evidence Are they from alt. splicing region? P-value Fold-change (log2) Base level expression around splice sites
1 TARP BC105589.J1-2 TRUE 9.08E-05 1.65501
2 SH3RF1 NM_020870.J11-12. FALSE 2.32E-05 1.602221 -
3 PPP3CA NM_000944.J5-6 TRUE 2.60E-05 1.52093
4 MARCH6 NM_005885.J9-10 TRUE 2.48E-05 1.501025 -
5 ARFGAP3 NM_014570.J2-3 TRUE 6.28E-05 1.441878
6 TAOK3 NM_016281.J18-19 FALSE 4.00E-05 1.379249
7 EIF2AK4 NM_001013703.J37-38 TRUE 3.15E-06 1.346129 -
8 TMEM87A NM_015497.J7-8 TRUE 3.81E-05 1.318233
9 TOM1L1 NM_005486.J5-6 TRUE 1.14E-05 1.222369
10 FERMT3 NT_033903.311.J10-11 FALSE 5.09E-05 1.211549 -
11 RPL7L1 NM_198486.J2-3 TRUE 4.14E-05 1.200866 -
12 TTC3 NM_003316.J18-19 TRUE 6.18E-05 1.183933 -
13 ACSL3 NM_004457.J12-13 TRUE 6.56E-05 1.158874
14 SF3B1 NM_012433.J4-5 TRUE 8.85E-05 1.147913
15 KLK3 BF372485.J1-2. TRUE 8.13E-05 1.14738 -
16 CTBP2 NM_001083914.J2-3 TRUE 6.29E-05 1.114432
17 SR140 NM_001080415.J25-26 TRUE 6.82E-05 1.109745 -
18 GTF3C1 NM_001520.J29-30 FALSE 5.11E-06 1.080653 -
19 CHEK1 NT_033899.609.J6-7 TRUE 6.83E-05 1.071581
20 C15orf44 NM_030800.J11-12. TRUE 2.45E-05 1.058924 -
21 CCDC14 NM_022757.J6-7 TRUE 1.26E-05 1.018248 -
22 KIAA0368 NM_001080398.J30-31 TRUE 6.62E-05 1.009773
23 COPZ1,MIR148B NM_016057.J3-4 TRUE 1.92E-05 1.001943
24 ECH1,HNRNPL NM_001533.J4-5 TRUE 1.64E-05 0.991637
25 CNDP1 chr18.71.004.a.J2-3 TRUE 4.40E-05 0.97475 -
26 NULL CN480760.J3-4 FALSE 5.32E-07 0.954029
27 BCLAF1 NM_014739.J8-9 TRUE 2.87E-05 0.905132
28 SON NM_138927.J10-11 TRUE 2.17E-05 0.902497
29 HSP90B1 NM_003299.J11-12 TRUE 1.11E-05 0.881922
30 TTC19 NM_017775.J3-4 TRUE 8.24E-05 0.87852 -
31 TSPAN1 NM_005727.J6-7 TRUE 9.96E-05 0.873753
32 NET1 NM_001047160.J6-7 TRUE 1.90E-06 0.869833
33 ATXN10 NM_013236.J4-5 TRUE 8.27E-05 0.826939
34 CANT1 NM_001159772.J3-4 TRUE 1.80E-05 0.793932 -
35 CCDC53 NM_016053.J3-4 TRUE 2.60E-05 0.780735 -
36 HADHA NM_000182.J7-8 TRUE 8.58E-05 0.758566 -
37 CBS NT_030188.38.J3-4 FALSE 4.96E-05 0.745529 -
38 SLTM NM_024755.J4-5 TRUE 6.69E-05 0.675305
39 DDX5 NM_004396.J3-4 TRUE 9.69E-05 0.671894
40 HSPA8 BG699643.J2-3 TRUE 1.46E-05 0.609402
41 LYNX1 NM_023946.J2-3 TRUE 4.67E-05 −1.56988
42 KLHL29 NM_052920.J10-11 FALSE 7.16E-05 −1.33184
43 ITGA3 NM_002204.J17-18 TRUE 1.59E-05 −1.23949
44 CNN2 NM_004368.J6-7. TRUE 2.77E-05 −1.19031
45 SIN3A NT_010194.1124.J12-13 FALSE 6.71E-05 −1.15772
46 LAMA5 NM_005560.J78-79 FALSE 5.75E-05 −1.13839
47 DPM2 NM_003863.J2-3 TRUE 2.18E-05 −1.11538
48 PINK1 NM_032409.J6-7 TRUE 1.10E-05 −1.09024
49 NCAPD2,SCARNA10 NT_009759.130.J28-29 FALSE 4.16E-05 −1.06536 -
50 EML2,MIR330 NM_012155.J17-18 FALSE 3.73E-05 −1.04227
51 HEATR7A NM_032450.J42-43 TRUE 5.59E-05 −0.97289 -
52 HEATR7A NM_032450.J18-19 TRUE 1.80E-05 −0.96627
53 ARAP1,STARD10 NM_001040118.J12-13 FALSE 6.18E-05 −0.95743
54 ALS2CL NM_147129.J15-16 FALSE 9.60E-05 −0.94678
55 RAB25 chr1.155.009.a.J2-3 FALSE 2.75E-05 −0.91566
56 NULL NT_030188.20.J5-6 FALSE 5.90E-05 −0.88101 -
57 ATF6B,TNXB NM_019105.J22-23 FALSE 9.19E-05 −0.85967
58 RUVBL2 NM_006666.J11-12 FALSE 3.78E-05 −0.75383
59 MAP3K12 NM_006301.J4-5 TRUE 6.44E-05 −0.72161
60 AIFM2 NM_032797.J7-8 FALSE 2.12E-05 −0.72049
61 ATP2A2 NM_001681.J19-20 FALSE 7.93E-05 −0.66293