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Table 1 Description of various data sources included in progmir database

From: PROGmiR: a tool for identifying prognostic miRNA biomarkers in multiple cancers using publicly available data

  Cancer type Dataset Source Platform No of samples No of miRNAs* Reference
1 Adrenocortial Carcinoma GSE22816 GEO Agilent-025987 Human miRNA Microarray Release 14.0 22 200 [52]
2 Acute Myeloid Leukemia LAML TCGA Illumina GA miRNA Seq 164 704 [51]
3 Brain Lower Grade Glioma LGG TCGA Illumina HISeq miRNA Seq 29 1046 [51]
4 Glioblastoma multiforme GBM TCGA UNC miRNA 8X15K 487 470 [51]
5 Breast Invasive Carcinoma BRCA TCGA Illumina GA and HISeq 727 1046 [51]
6 Non-small-cell Lung Cancer GSE16025 GEO mirVANA miRNA Bioarray V2 60 328 [53]
7 Small Cell Lung Cancer GSE27435 GEO Capitalbio mammal microRNA V3.0 42 1638 [54]
8 Lung Adenocarcinoma LUAD TCGA Illumina GA and HISeq 79 1046 [51]
9 Lung Squamous Cell Carcinoma LUSC TCGA Illumina GA and HISeq 185 1046 [51]
10 Hepatocellular Carcinoma GSE31384 GEO CapitalBio custom Human microRNA array 166 682 [55]
11 Head and Neck Squamous Cell Carcinoma HNSC TCGA Illumina GA and HISeq 89 1046 [51]
12 Ovarian Cystadenocarcinoma OV TCGA UNC miRNA 8X15K 46 705 [51]
13 Rectal Adenocarcinoma READ TCGA Illumina GA miRNA Seq 38 705 [51]
14 Renal Clear Cell Carcinoma KIRC TCGA Illumina GA and HISeq 546 1046 [51]
15 Stomach Ademocarcinoma STAD TCGA Illumina GA and HISeq 79 1046 [51]
16 Uterine Corpus Endometroid Carcinoma UCEC TCGA Illumina GA and HISeq 358 1046 [51]
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Journal of Clinical Bioinformatics

ISSN: 2043-9113