PROGmiR: a tool for identifying prognostic miRNA biomarkers in multiple cancers using publicly available data

Table 1 Description of various data sources included in progmir database

	Cancer type	Dataset	Source	Platform	No of samples	No of miRNAs*	Reference
1	Adrenocortial Carcinoma	GSE22816	GEO	Agilent-025987 Human miRNA Microarray Release 14.0	22	200	[52]
2	Acute Myeloid Leukemia	LAML	TCGA	Illumina GA miRNA Seq	164	704	[51]
3	Brain Lower Grade Glioma	LGG	TCGA	Illumina HISeq miRNA Seq	29	1046	[51]
4	Glioblastoma multiforme	GBM	TCGA	UNC miRNA 8X15K	487	470	[51]
5	Breast Invasive Carcinoma	BRCA	TCGA	Illumina GA and HISeq	727	1046	[51]
6	Non-small-cell Lung Cancer	GSE16025	GEO	mirVANA miRNA Bioarray V2	60	328	[53]
7	Small Cell Lung Cancer	GSE27435	GEO	Capitalbio mammal microRNA V3.0	42	1638	[54]
8	Lung Adenocarcinoma	LUAD	TCGA	Illumina GA and HISeq	79	1046	[51]
9	Lung Squamous Cell Carcinoma	LUSC	TCGA	Illumina GA and HISeq	185	1046	[51]
10	Hepatocellular Carcinoma	GSE31384	GEO	CapitalBio custom Human microRNA array	166	682	[55]
11	Head and Neck Squamous Cell Carcinoma	HNSC	TCGA	Illumina GA and HISeq	89	1046	[51]
12	Ovarian Cystadenocarcinoma	OV	TCGA	UNC miRNA 8X15K	46	705	[51]
13	Rectal Adenocarcinoma	READ	TCGA	Illumina GA miRNA Seq	38	705	[51]
14	Renal Clear Cell Carcinoma	KIRC	TCGA	Illumina GA and HISeq	546	1046	[51]
15	Stomach Ademocarcinoma	STAD	TCGA	Illumina GA and HISeq	79	1046	[51]
16	Uterine Corpus Endometroid Carcinoma	UCEC	TCGA	Illumina GA and HISeq	358	1046	[51]