Table 1 Description of the 4 sequence datasets and 14 subsets
From: Analysis of the salivary microbiome using culture-independent techniques
Dataset | |||||||
|---|---|---|---|---|---|---|---|
16S-HTS, 20 cycles | 16S-HTS, 25 cycles | 16S-HTS, 30 cycles | WGS | ||||
Generated reads | 16,345,598 | 10,732,108 | 6,150,466 | 14'724,838 | |||
Randomly chosen read pairs | 1,200,000 | 1,200,000 | 1,200,000 | 1,000,000 | |||
16S rDNA region subset | V1 | V3 | V1 | V3 | V1 | V3 | |
Filtered forward reads | 592,322 | 566,310 | 576,701 | 564,774 | 546,710 | 569,459 | 1,000,000 |
Filtered reverse reads | 532,945 | 530,504 | 534,229 | 523,548 | 548,009 | 495,531 | 1,000,000 |