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Table 4 Detection of viral sequences in the WGS dataset using BLASTN

From: Analysis of the salivary microbiome using culture-independent techniques

 

Number of hits a

 

F

R

Virus

  

Human herpesvirus 7

17

15

Porcine endogenous retrovirus E

1

-

Paramecium bursaria chlorella virus-1 FR483

1

1

Phage

  

Enterobacteria phage lambda

12

11

Enterobacteria phage phiX174

6

7

Streptococcus phage SM1

1

-

  1. F, forward run; R, reverse run.
  2. a The following BLASTN parameters were used: wordsize = 16, e ≤ 10-30, sequence identity ≥ 94%, alignment length ≥ 90 nt.
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Journal of Clinical Bioinformatics

ISSN: 2043-9113