Correlation of gene expression between matched FF and FFPET samples | Percentage present call† | Percentage probe sets with expression > LOB | Percentage genes with non-consistent expression across multiple probe sets | |
---|---|---|---|---|
Median (25%, 75% quantiles) | Median (25%, 75% quantiles) | |||
FF: | N/A | 49.7 (47.3, 50.6) | 51.4 | 17.4 |
FFPET: Affymetrix | 0.78 (0.72, 0.81) | 33.4 (21.8, 38.1) | 36.2 | 19.4 |
FFPET: NuGEN | 0.88 (0.84, 0.89) | 47.2 (44.1, 58.1) | 52.7 | 17.9 |
FFPET: Sigma/Rubicon | 0.48 (0.47, 0.52) | 22.9 (22.1, 24.6) | 16.4 | 28.0 |