Table 1 Predicted miRNAs that hit LMNA 3'UTR mRNA
From: A ceRNA analysis on LMNA gene focusing on the Hutchinson-Gilford progeria syndrome
Gene name | RefSeqID | MicroRNA | StemLoop ID | Seed length | Start | Sequence | End | Region | Pvalue | mimiRNA correlation coefficient | mimiRNA Pvalue |
|---|---|---|---|---|---|---|---|---|---|---|---|
LMNA | NM_170707 | hsa-miR-539 | hsa-mir-539 | 10 | 2490 | GGAGAAAUUA | 2481 | 3 UTR | 0.0010 | −0.499 | 0.081 |
LMNA | NM_170707 | hsa-miR-671-5p | hsa-mir-671 | 10 | 2553 | AGGAAGCCCU | 2544 | 3 UTR | 0.0010 | −0.212 | 0.093 |
LMNA | NM_170707 | hsa-miR-214 | hsa-mir-214 | 9 | 2780 | ACAGCAGGC | 2772 | 3 UTR | 0.0038 | 0.131 | 0.37 |
LMNA | NM_170707 | hsa-miR-9 | hsa-mir-9-1 | 9 | 2544 | UCUUUGGUU | 2536 | 3 UTR | 0.0038 | −0.133 | 0.32 |
LMNA | NM_170707 | hsa-miR-637 | hsa-mir-637 | 9 | 2828 | ACUGGGGGC | 2820 | 3 UTR | 0.0038 | −0.675 | 0.066 |
LMNA | NM_170707 | hsa-miR-298 | hsa-mir-298 | 9 | 2600 | AGCAGAAGC | 2592 | 3 UTR | 0.0038 | no results | no results |
LMNA | NM_170707 | hsa-miR-34a | hsa-mir-34a | 8 | 2709 | UGGCAGUG | 2702 | 3 UTR | 0.0151 | 0.26 | 0.0071 |
LMNA | NM_170707 | hsa-miR-342-5p | hsa-mir-342 | 8 | 3183 | AGGGGUGC | 3176 | 3 UTR | 0.0151 | −0.212 | 0.093 |
LMNA | NM_170707 | hsa-miR-449a | hsa-mir-449a | 8 | 2709 | UGGCAGUG | 2702 | 3 UTR | 0.0151 | no results | no results |
LMNA | NM_170707 | hsa-miR-532-3p | hsa-mir-532 | 8 | 2933 | CCUCCCAC | 2926 | 3 UTR | 0.0151 | 0.851 | 0.032 |
LMNA | NM_170707 | hsa-miR-608 | hsa-mir-608 | 8 | 2838 | AGGGGUGG | 2831 | 3 UTR | 0.0151 | −0.757 | 0.0138 |