Skip to main content

Table 5 Odds ratio ( OR ) (95% CI) ( p -value) for SNP interactions in SNP (3, 4) combinations

From: Improved branch and bound algorithm for detecting SNP-SNP interactions in breast cancer

 

Statistics

CXCR4*

Genotypes (X)

   

CC

CT

TT

KITLG *

GG

OR a

0.657

1.557

1.528

Genotypes (Y)

CI

0.459-0.940

0.936-2.590

0.414-5.636

p-value

0.025

0.110

0.719

(Ca./Co.)

(69/137)

(33/34)

(4/4)

AG

OR a

1.092

1.222

1.012

CI

0.757-1.576

0.712-2.098

0.201-5.111

p-value

0.639

0.484

1.000

(Ca./Co.)

(70/100)

(26/33)

(2/3)

AA

OR a

1.076

1.012

N.E

CI

0.511-2.266

0.303-3.382

 

p-value

0.848

1.000

 

(Ca./Co.)

(12/17)

(4/6)

 
  1. NOTE - *: SNPs (3, 4) pair with its corresponding genotypes CXCR4-rs2228014-genotype X and KITLG-rs10506957-genotype Y; a: OR in reference to the other group (1.000); CI: Confidence Interval; Ca.: case; Co.: control; N.E: Not estimable.