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Table 1 Enriched pathways in disjoint catalog analysis

From: Characteristics of cross-hybridization and cross-alignment of expression in pseudo-xenograft samples by RNA-Seq and microarrays

 

Human

Mouse

 

Cross-alignment

Cross hybridization

Cross-alignment

Cross hybridization

1

Cytoskeleton remodeling: keratin filaments

Protein folding and maturation: POMC processing

Cytoskeleton remodeling: neurofilaments

Neurophysiological process: Dopramine D2 receptor transactivation of PDGFR in CNS

2

Signal transduction: cAMP signaling

Normal and pathological: TGF-beta mediated regulation of cell proliferation

DNA damage: ATM/ATR regulation of G2M checkpoint

Transcription role of heterochromatin protein 1 (HP1) family in transcriptional silencing

3

Development: regulation of epithelial to mesenchymal transition (EMT)

Cytoskeleton remodeling: TGF, WNT and cytoskeletal remodeling

Cell cycle: role of Nek in cell cycle regulation

Development: hedgehog and PTH signaling pathways in bone and cartilage development

4

Cell adhesion: gap junctions

Signal transduction, Erk interaction: inhibition of Erk

Cell cycle: spindle assembly and chromosome separation

Cytoskeleton remodeling: neurofilaments

5

Development: transcription regulation of granulocyte development

Development: melanocyte development ang pigmentation

Development: hedgehog signaling

Development: Gastrin in differentiation of the gastric mucosa

6

Cytoskeleton remodelling: regulation of actin cytoskeleton by Rho GTPases

Translation: non-genomic (rapid) action of androgen receptor

Mechanisms of CFTR activation by S-nitrosoglutathione (normal and CF)

Blood coagulation: Blood coagulation

7

Cell adhesion: Histamine H1 receptor signlaing in the interruption to cell barrier integrity

G-protein signaling : Rap1A regulation pathway

Development: FGFR signaling pathway

Development thrombopotein-regulated cell processes

8

Development: beta-adrenergic receptors signaling via cAMP

Development: GDNF family signaling

Muscle contraction: regulation of eNOS activity in endothelial cells

Neurophysiologiacal process: ACM regulation of nerve impulse

9

Cytoskeleton remodeling: reverse signaling by Ephrin B

DNA damage: role of SUMO in p53 regulation

GFTR folding and maturation (normal and CF)

Development: WNT5 signaling

10

Regulation of lipid metabolism: regualtion of lipid metabolism by niacin and isoprenaline

Muscle contaction: relaxin signaling pathway

DNA damage: role of SUMO in p53 regulation

Transport: Alpha-2 energenic receptor regulation of Ion channels

  1. Enriched GeneGo pathway maps for human and mouse. Gene lists for pathway analsysis were obtained from the disjoint gene catalog analysis for both cross-hybridization (microarrays) and cross-alignment (RNA-Seq).