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Table 2 Enriched pathways in CCDS analysis

From: Characteristics of cross-hybridization and cross-alignment of expression in pseudo-xenograft samples by RNA-Seq and microarrays

 

Human

Mouse

 

Cross-alignment

Cross hybridization

Cross-alignment

Cross hybridization

1

Development: regulation of epithelial to mesenchymal (EMT)

Protein folding and maturation: POMC processing

Cell cycle: role of Nek in cell cycle regulation

Signal transduction: activin A signaling regulation

2

Cytoskeleton remodeling: Keratin filaments

Normal and pathological TGF-beta mediated regulation of cell proliferation

Cell cycle: the methaphase checkpoint

Transcription role of heterochromatin protein 1 (HP1) family in trancriptional silencing

3

Cardia hypertrophy NF-AT signaling in cardia hypertrophy

Signal transduction, Erk interactions: inhibition of Erk

Cytoskeleton remodeling: neurofilaments

Cytoskeleton remodeling: neurofilaments

4

Cell adhesion: gap junctions

Development: melaconyte development and pigmentation

ATP metabolism

Dvelopment: thrombopoietin regulated cell process

5

Cell adhesion: hestamine H1 receptor signaling in the interruption of cell barrier integrity

Cytoskeleton remodeling: TGF, WNT and cytoskeletal remodeling

Cell cycle: spindle assembly and chromosome separation

Neurophysiological process nNOS signaling in neronal synapases

6

Signal transduction: cAMP signaling

Develeopment A2A receptor signaling

dCTP/dUTP metabolism

Development: role of HDAC and calcium/calmodulin dependent kinase (CaMK) in control of skeletal of myogenesis

7

Immune response: MIF-neuroendocrine macrophage connector

Development transcription regulation of granulocyte development

Apoptosis and survival: DNA damage induced apoptosis

Protein folding: membrane trafficking and signal transduction of G-alpha heterotrimeic G-protein

8

Development transcription: regulation of grabulocyte development

Cytoskeleton remodeling Alpha-1A andrenergic recepto- dependent inhibition of PI3K

Transcription: androgen receptor nuclear signaling

Development: role of activin A in cell differentiation and proliferation

9

Cell adhesion: edothelial cell contacts by junctional mechanisms

Muscle contraction: relaxin signaling pathway

Neurophysiological process: ACM regulation of nerve impulse

Development: WNT5A signaling

10

Atherosclerosis: role of ZNF202 in regulation of expression of genes involved in Atherosclerosis

Immune response: lectin induced complement pathway

Development WNT signaling pathway

Development: PIP3 signaling in cardiac myocytes

  1. Enriched GeneGo pathway maps for human and mouse. Gene lists for pathway analysis were obtained from the CCDS ID analysis for cross-hybridization (microarrays) and cross-alignment (RNA-Seq).