Table 1 Results of quality filtering and taxonomy assignment
ID | Raw reads | QC | Bacteria identified | Probiotics | Pathogens | ||||
|---|---|---|---|---|---|---|---|---|---|
B011 | 125420 | 117451 | 93.65% | 90952 | 77.44% | 60 | 0.07% | 3509 | 3.86% |
B012 | 132240 | 120134 | 90.85% | 94679 | 78.81% | 3457 | 3.65% | 20109 | 21.24% |
B013 | 151876 | 142585 | 93.88% | 99025 | 69.45% | 3452 | 3.49% | 21341 | 21.55% |
B014 | 134619 | 126784 | 94.18% | 95377 | 75.23% | 611 | 0.64% | 6665 | 6.99% |
B016 | 135457 | 126507 | 93.39% | 89407 | 70.67% | 49 | 0.05% | 20870 | 23.34% |
B017 | 141682 | 131968 | 93.14% | 89465 | 67.79% | 1064 | 1.19% | 8944 | 10.00% |
B018 | 111228 | 102382 | 92.05% | 56981 | 55.66% | 910 | 1.60% | 11630 | 20.41% |
B019 | 128532 | 120719 | 93.92% | 76877 | 63.68% | 305 | 0.40% | 2775 | 3.61% |
B020 | 128441 | 121957 | 94.95% | 89618 | 73.48% | 123 | 0.14% | 3673 | 4.10% |
B031 | 140941 | 132311 | 93.88% | 97962 | 74.04% | 2129 | 2.17% | 5194 | 5.30% |
B033 | 142462 | 134554 | 94.45% | 80548 | 59.86% | 229 | 0.28% | 2725 | 3.38% |
B034 | 148854 | 140059 | 94.09% | 106050 | 75.72% | 9857 | 9.29% | 15436 | 14.56% |
Total | 1621752 | 1517411 | 93.54% | 1066941 | 70.31% | 22246 | 2.09% | 122871 | 11.52% |