Clinical detection of human probiotics and human pathogenic bacteria by using a novel high-throughput platform based on next generation sequencing

Table 2 The quantities (matched sequenced reads) of probiotics identified in the samples in the case study

Probiotics	B011	B012	B013	B014	B016	B017	B018	B019	B020	B031	B033	B034
Bacillus coagulans	0	81	6	1	2	0	3	0	1	0	9	1	104
Bifidobacterium adolescentis	4	3	1520	81	1	372	185	177	1	5	0	375	2724
Bifidobacterium animalis	0	101	37	3	1	16	32	1	1	0	0	50	242
Bifidobacterium bifidum	0	3	3	0	0	84	2	0	0	0	0	21	113
Bifidobacterium breve	0	1092	465	96	6	102	212	13	2	9	18	79	2094
*Bifidobacterium longum	3	1859	1092	198	27	256	439	34	5	15	55	238	4221
Lactobacillus brevis	0	0	0	0	0	0	1	0	0	0	0	10	11
Lactobacillus casei	0	10	1	1	0	0	0	0	0	1	0	0	13
Lactobacillus fermentum	0	0	0	0	1	0	0	4	0	1	0	28	34
Lactobacillus gasseri	0	0	0	1	1	0	0	0	0	0	0	77	79
Lactobacillus johnsonii	0	0	0	0	0	0	0	0	0	0	0	7	7
Lactobacillus paracasei	0	1	2	0	0	0	0	0	0	0	0	1	4
Lactobacillus plantarum	1	0	0	2	0	0	0	0	0	0	0	0	3
Lactobacillus reuteri	0	0	0	1	0	0	0	0	0	0	0	1	2
Lactobacillus rhamnosus	0	1	0	0	0	0	0	0	0	0	0	2	3
*Lactobacillus salivarius	2	1	2	8	1	5	3	1	3	11	2	6753	6792
Lactococcus lactis	2	0	0	6	1	0	2	0	0	16	1	10	38
*Streptococcus thermophilus	48	305	324	213	8	229	31	75	110	2071	144	2204	5762
	60	3457	3452	611	49	1064	910	305	123	2129	229	9857

For each species, if the number of reads is 0 for all samples, that species was not shown.
*The leading three probiotics are Lactococcus salivarius, Streptococcus thermophilus and Bifidobacterium longum.