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Table 5 Disease-related biomarkers of seven diseases

From: Clinical detection of human probiotics and human pathogenic bacteria by using a novel high-throughput platform based on next generation sequencing

Disease

Marker

Correlation

Lower bound

Upper bound

Case

Control

Pubmed ID

Constipation

Escherichia coli

-

2.86E-03

1.52E-01

35

35

20039451

Roseburia

-

1.41E-03

4.61E-02

14

12

22315951

Lactobacillus

-

6.10E-05

9.45E-03

14

12

22315951

Bifidobacterium

-

5.39E-05

1.73E-02

14

12

22315951

Enterobacteriaceae

+

1.00E-02

4.26E-01

14

12

22315951

Ruminococcus bromii

+

1.16E-05

4.98E-03

8

15

20014457

Obesity

Prevotella

-

2.46E-03

5.36E-01

23

13

20876719

Bifidobacterium

-

5.39E-05

1.73E-02

33

30

19498350

Lachnospiraceae

-

3.11E-03

6.74E-02

3

3

19164560

Verrucomicrobiae

-

1.43E-05

1.78E-02

3

3

19164560

Akkermansia

-

1.43E-05

1.78E-02

3

3

19164560

Faecalibacterium prausnitzii

+

7.70E-04

2.15E-02

15

13

19849869

Lactobacillus

+

6.10E-05

9.45E-03

20

20

19774074

Coriobacteriaceae

+

3.26E-05

4.72E-03

3

3

19164560

Erysipelotrichaceae

+

1.35E-04

6.64E-03

3

3

19164560

Ulcerative colitis

Bacteroides uniformis

-

7.63E-04

5.44E-02

13

22

21073731

Bacteroides vulgatus

-

1.55E-03

4.21E-02

13

22

21073731

Parabacteroides distasonis

-

2.22E-05

1.68E-03

13

22

21073731

Faecalibacterium prausnitzii

-

7.70E-04

2.15E-02

13

27

19235886

Firmicutes

-

9.18E-02

4.50E-01

13

27

19235886

Clostridium

-

2.48E-03

6.03E-02

31

30

21253779

Clostridium leptum

-

9.65E-06

1.05E-03

13

27

19235886

Bifidobacterium

-

5.39E-05

1.73E-02

13

27

19235886

Bacteroides ovatus

-

2.04E-04

1.81E-02

13

22

21073731

Escherichia coli

+

2.86E-03

1.52E-01

9

9

16954244

Atopic dermatitis

Lactobacillus

-

6.10E-05

9.45E-03

68

256

17604093

Bifidobacteriales

-

8.09E-05

1.84E-02

7

27

20626364

Bacteroides

+

6.56E-02

6.37E-01

68

256

17604093

Clostridium perfringens

+

0.00E + 00

1.06E-04

15

15

21963389

Colorectal cancer

Bacteroides uniformis

-

7.63E-04

5.44E-02

46

56

21850056

Roseburia

-

1.41E-03

4.61E-02

46

56

21850056

Fusobacterium

-

3.32E-05

2.64E-02

50

38

7574628

Eubacterium

-

1.36E-03

7.92E-02

46

56

21850056

Coprococcus

-

1.91E-05

2.89E-03

21

23

20740058

Collinsella aerofaciens

-

2.39E-05

2.09E-03

50

38

7574628

Alistipes

-

4.07E-04

2.60E-02

46

56

21850056

Sutterellaceae

-

9.39E-04

4.85E-02

46

56

21850056

Escherichia

+

3.05E-03

1.85E-01

46

56

21850056

Shigella

+

1.51E-03

8.84E-02

46

56

21850056

Bacteroides fragilis

+

7.22E-06

1.92E-02

46

56

21850056

Porphyromonas

+

0.00E + 00

1.59E-05

46

56

21850056

Faecalibacterium prausnitzii

+

7.70E-04

2.15E-02

50

38

7574628

Ruminococcus albus

+

0.00E + 00

4.95E-04

50

38

7574628

Streptococcus

+

1.12E-04

6.83E-03

46

56

21850056

Blautia hansenii

+

0.00E + 00

6.77E-05

50

38

7574628

Enterococcus

+

0.00E + 00

1.19E-04

46

56

21850056

Bifidobacterium angulatum

+

0.00E + 00

2.60E-05

50

38

7574628

Blautia producta

+

0.00E + 00

1.10E-04

50

38

7574628

Ruminococcus gnavus

+

1.04E-05

2.64E-03

50

38

7574628

Eubacterium eligens

+

7.09E-05

2.05E-02

50

38

7574628

Eubacterium rectale

+

8.13E-05

1.34E-02

50

38

7574628

Bacteroides stercoris

+

4.87E-05

2.94E-02

50

38

7574628

Enterobacteriales

+

1.00E-02

4.26E-01

10

10

21647227

Erysipelotrichaceae

+

1.35E-04

6.64E-03

50

38

7574628

Dorea

+

5.67E-05

6.08E-03

21

23

20740058

Bifidobacterium longum

+

1.56E-05

3.60E-03

50

38

7574628

Faecalibacterium

+

1.66E-03

6.79E-02

21

23

20740058

Irritable bowel syndrome

Bacteroides uniformis

-

7.63E-04

5.44E-02

11

22

21073731

Bacteroides vulgatus

-

1.55E-03

4.21E-02

11

22

21073731

Parabacteroides distasonis

-

2.22E-05

1.68E-03

11

22

21073731

Faecalibacterium prausnitzii

-

7.70E-04

2.15E-02

23

23

22339879

Bacteroidetes

-

2.87E-01

7.95E-01

62

46

21820992

Bifidobacterium

-

5.39E-05

1.73E-02

62

46

21820992

Bacteroides ovatus

-

2.04E-04

1.81E-02

11

22

21073731

Faecalibacterium

-

1.66E-03

6.79E-02

62

46

21820992

Escherichia coli

+

2.86E-03

1.52E-01

14

18

22356587

Haemophilus

+

1.02E-05

1.69E-03

22

22

21741921

Fusobacterium

+

3.32E-05

2.64E-02

23

23

22339879

Gammaproteobacteria

+

1.75E-02

4.69E-01

22

22

21741921

Ruminococcus

+

1.22E-03

4.08E-02

62

46

21820992

Enterococcus

+

0.00E + 00

1.19E-04

23

23

22339879

Veillonella

+

1.12E-05

7.82E-03

26

26

19903265

Lactobacillaceae

+

6.10E-05

9.45E-03

23

23

22339879

Dorea

+

5.67E-05

6.08E-03

62

46

21820992

Allergic rhinitis

Lactobacillus

-

6.10E-05

9.45E-03

12

12

19714856

Bifidobacterium

-

5.39E-05

1.73E-02

67

20

101

Bacteroides fragilis

+

7.22E-06

1.92E-02

22

22

17893165

Faecalibacterium prausnitzii

+

7.70E-04

2.15E-02

22

22

17893165

  1. The associations between bacterium and disease are majorly collected from case–control studies which the quantities of bacterium are obtained from deep sequencing data. The proportion of 78 bacteria from control group was applied as risk markers (constipation: 6, obesity: 9, IBS: 17, UC: 10, CC: 28, AD: 4, AR: 4) to predict disease risk to seven diseases in this study.