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Figure 1 | Journal of Clinical Bioinformatics

Figure 1

From: Copy number variation analysis based on AluScan sequences

Figure 1

Schematic diagram of the AluScanCNV calling method. CNV calling is conducted employing the test sample either with a reference template constructed from pooled reference samples in (I) unpaired analysis, or with a paired control sample in (II) paired analysis, to yield read-depth ratios. GHT is used to call localized CNVs and in turn recurrent CNVs; or alternately CBS is used to call extended CNVs.

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