Figure 5

Chromosomal distribution of localized CNVs called using different window sizes. GHT-based localized CNVs were called from GL2T AluScan compared to the 23-sample reference template using 5 kb (A), 100 kb (B), 300 kb (C) and 500 kb windows (D). CNV Frequency on the y-axis represents the fraction of windows on a chromosome showing CNV gain (upward blue bars) or CNV loss (downward red bars).